Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carboxypepd_reg-like domain-containing protein | SAMN04488101_101471 | Not Available | + | 554145 - 556964 | 105446.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101472 | Not Available | + | 557177 - 557770 | 22450.2 |
| fecr family protein | SAMN04488101_101473 | Not Available | + | 557837 - 559033 | 43934.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101474 | Not Available | + | 559163 - 562741 | 133558.0 |
| susd family protein | SAMN04488101_101475 | Not Available | + | 562754 - 564208 | 54954.6 |
| hypothetical protein | SAMN04488101_101476 | Not Available | + | 564232 - 565152 | 34924.3 |
| peroxiredoxin | SAMN04488101_101477 | Not Available | + | 565213 - 566346 | 41084.4 |
| rna polymerase sigma-70 factor, bacteroides expansion family 1 | SAMN04488101_101478 | Not Available | + | 566487 - 567065 | 22923.7 |
| fecr family protein | SAMN04488101_101479 | Not Available | + | 567117 - 568277 | 42722.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101480 | Not Available | + | 568521 - 572153 | 136289.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.