Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| iron (metal) dependent repressor, dtxr family | SAMN04488101_12337 | Not Available | + | 5887817 - 5888500 | 25978.6 |
| manganese transport protein | SAMN04488101_12338 | Not Available | + | 5888502 - 5890373 | 68781.1 |
| ssra-binding protein | SAMN04488101_12339 | Not Available | + | 5890397 - 5890846 | 17614.6 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN04488101_12340 | Not Available | - | 5890853 - 5891509 | 24696.8 |
| replication restart dna helicase pria | SAMN04488101_12341 | Not Available | - | 5891610 - 5894084 | 93963.7 |
| uncharacterized membrane protein ygdd, tmem256/duf423 family | SAMN04488101_12342 | Not Available | - | 5894087 - 5894473 | 14050.5 |
| hypothetical protein | SAMN04488101_12343 | Not Available | + | 5894582 - 5896156 | 59511.2 |
| hypothetical protein | SAMN04488101_12344 | Not Available | + | 5896172 - 5897611 | 53968.8 |
| trna threonylcarbamoyladenosine biosynthesis protein tsab | SAMN04488101_12345 | Not Available | - | 5897613 - 5898299 | 24604.6 |
| hypothetical protein | SAMN04488101_12346 | Not Available | - | 5898334 - 5898564 | 8679.76 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.