Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | SAMN04488101_12231 | Not Available | + | 5841363 - 5841998 | 23710.1 |
| gluconate 2-dehydrogenase subunit 3 | SAMN04488101_12232 | Not Available | - | 5842017 - 5842634 | 22827.3 |
| choline dehydrogenase | SAMN04488101_12233 | Not Available | - | 5842651 - 5844387 | 63662.8 |
| hypothetical protein | SAMN04488101_12234 | Not Available | + | 5844737 - 5850573 | 201025.0 |
| cytochrome c biogenesis protein transmembrane region | SAMN04488101_1231 | Not Available | - | 5850574 - 5851303 | 25565.4 |
| cysteine synthase a | SAMN04488101_1232 | Not Available | - | 5851333 - 5852382 | 38157.2 |
| winged helix-turn-helix dna-binding | SAMN04488101_1233 | Not Available | + | 5852418 - 5852690 | 10596.2 |
| protein of unknown function | SAMN04488101_1234 | Not Available | - | 5852701 - 5853405 | 26032.5 |
| predicted dehydrogenase | SAMN04488101_1235 | Not Available | - | 5853430 - 5854734 | 47969.1 |
| mfs transporter, fsr family, fosmidomycin resistance protein | SAMN04488101_1236 | Not Available | - | 5854803 - 5856029 | 44274.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.