Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_12122 | Not Available | + | 5760155 - 5760301 | 5663.64 |
| histidine kinase | SAMN04488101_12123 | Not Available | + | 5760704 - 5761756 | 40717.8 |
| peroxiredoxin | SAMN04488101_12124 | Not Available | + | 5761796 - 5762929 | 42415.8 |
| two component transcriptional regulator, lyttr family | SAMN04488101_12125 | Not Available | + | 5762926 - 5763621 | 26562.2 |
| serine/threonine protein kinase | SAMN04488101_12126 | Not Available | - | 5763667 - 5764995 | 49217.1 |
| hypothetical protein | SAMN04488101_12127 | Not Available | - | 5765359 - 5765523 | 6481.87 |
| hypothetical protein | SAMN04488101_12128 | Not Available | + | 5765877 - 5766281 | 14364.7 |
| protein of unknown function (du1801) | SAMN04488101_12129 | Not Available | + | 5766374 - 5766799 | 15922.3 |
| helix-turn-helix domain-containing protein | SAMN04488101_12130 | Not Available | - | 5766819 - 5767715 | 34613.0 |
| hypothetical protein | SAMN04488101_12131 | Not Available | + | 5767894 - 5768970 | 39930.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.