Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| heme oxygenase | SAMN04488101_12057 | Not Available | + | 5707190 - 5707750 | 20167.9 |
| protein of unknown function | SAMN04488101_12058 | Not Available | - | 5707771 - 5708469 | 26269.0 |
| alpha-l-fucosidase | SAMN04488101_12059 | Not Available | + | 5708705 - 5710168 | 54621.8 |
| hypothetical protein | SAMN04488101_12060 | Not Available | - | 5710233 - 5711051 | 30559.6 |
| copper chaperone copz | SAMN04488101_12061 | Not Available | - | 5711061 - 5711597 | 19413.3 |
| hypothetical protein | SAMN04488101_12062 | Not Available | - | 5711730 - 5712128 | 14458.7 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN04488101_12063 | Not Available | - | 5712230 - 5712880 | 24265.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_12064 | Not Available | + | 5713132 - 5713707 | 22943.6 |
| fecr family protein | SAMN04488101_12065 | Not Available | + | 5713804 - 5714952 | 42431.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_12066 | Not Available | + | 5715171 - 5718596 | 128085.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.