Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein tyrosine phosphatase | SAMN04488101_12047 | Not Available | - | 5701748 - 5702167 | 15632.5 |
| hypothetical protein | SAMN04488101_12048 | Not Available | - | 5702193 - 5702768 | 20859.0 |
| transcriptional regulator, arsr family | SAMN04488101_12049 | Not Available | - | 5702806 - 5703135 | 11835.5 |
| nad-dependent deacetylase | SAMN04488101_12050 | Not Available | - | 5703219 - 5703914 | 25814.9 |
| outer membrane transport energization protein exbd (tc 2.c.1.1.1) | SAMN04488101_12051 | Not Available | + | 5704005 - 5704520 | 19029.3 |
| hypothetical protein | SAMN04488101_12052 | Not Available | - | 5704523 - 5704708 | 6994.63 |
| ketosteroid isomerase homolog | SAMN04488101_12053 | Not Available | + | 5704792 - 5705160 | 13849.4 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN04488101_12054 | Not Available | - | 5705236 - 5705958 | 25546.8 |
| uncharacterized conserved protein ycii, contains a putative active-site phosphohistidine | SAMN04488101_12055 | Not Available | + | 5706080 - 5706544 | 17028.7 |
| cold-shock dna-binding protein family | SAMN04488101_12056 | Not Available | - | 5706604 - 5706795 | 6863.07 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.