Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101451 | Not Available | + | 530992 - 531552 | 21774.3 |
| dnaj domain-containing protein | SAMN04488101_101452 | Not Available | + | 531733 - 532179 | 16927.3 |
| dna polymerase-4 | SAMN04488101_101453 | Not Available | + | 532580 - 533737 | 43256.0 |
| dna polymerase iii, alpha subunit | SAMN04488101_101454 | Not Available | + | 533741 - 536692 | 112483.0 |
| hypothetical protein | SAMN04488101_101455 | Not Available | + | 536937 - 537215 | 10893.0 |
| dna-binding transcriptional regulator, lrp family | SAMN04488101_101456 | Not Available | - | 537226 - 537693 | 17654.5 |
| rna polymerase primary sigma factor | SAMN04488101_101457 | Not Available | + | 537873 - 538733 | 32789.2 |
| alkylated dna repair dioxygenase alkb | SAMN04488101_101458 | Not Available | + | 538745 - 539350 | 23529.4 |
| transcriptional regulator, tetr family | SAMN04488101_101459 | Not Available | + | 539447 - 540049 | 22895.7 |
| putative oxidoreductase | SAMN04488101_101460 | Not Available | + | 540102 - 540533 | 15962.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.