Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nudix domain-containing protein | SAMN04488101_12027 | Not Available | + | 5677730 - 5678170 | 16685.7 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SAMN04488101_12028 | Not Available | + | 5678167 - 5679435 | 47424.5 |
| hypothetical protein | SAMN04488101_12029 | Not Available | + | 5679438 - 5680046 | 23340.9 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_12030 | Not Available | + | 5680214 - 5680918 | 26643.3 |
| winged helix-turn-helix dna-binding | SAMN04488101_12031 | Not Available | + | 5681003 - 5681497 | 18777.8 |
| lysophospholipase, alpha-beta hydrolase superfamily | SAMN04488101_12032 | Not Available | - | 5681547 - 5682359 | 30802.2 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04488101_12033 | Not Available | - | 5682381 - 5682881 | 19301.5 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN04488101_12034 | Not Available | + | 5682970 - 5685300 | 87376.5 |
| protein of unknown function | SAMN04488101_12035 | Not Available | + | 5685305 - 5686117 | 29951.6 |
| gaf sensor signal transduction histidine kinase | SAMN04488101_12036 | Not Available | + | 5686182 - 5687369 | 44098.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.