Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN04488101_12017 | Not Available | + | 5669119 - 5669853 | 28021.4 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | SAMN04488101_12018 | Not Available | + | 5669850 - 5670140 | 11015.3 |
| putative abc transport system atp-binding protein | SAMN04488101_12019 | Not Available | + | 5670194 - 5670979 | 28474.3 |
| cob(i)alamin adenosyltransferase | SAMN04488101_12020 | Not Available | + | 5670983 - 5671531 | 20832.4 |
| protein of unknown function | SAMN04488101_12021 | Not Available | + | 5671663 - 5671884 | 8587.66 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | SAMN04488101_12022 | Not Available | - | 5671909 - 5672595 | 25226.6 |
| s-adenosylmethionine--trna ribosyltransferase-isomerase | SAMN04488101_12023 | Not Available | - | 5672691 - 5673740 | 40004.2 |
| putative abc transport system permease protein | SAMN04488101_12024 | Not Available | + | 5673915 - 5675156 | 45510.7 |
| aspartate aminotransferase | SAMN04488101_12025 | Not Available | - | 5675427 - 5676620 | 43843.3 |
| cation diffusion facilitator family transporter | SAMN04488101_12026 | Not Available | + | 5676735 - 5677733 | 37194.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.