Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aaa domain-containing protein, putative abieii toxin, type iv ta system | SAMN04488101_11952 | Not Available | + | 5627664 - 5629721 | 79073.5 |
| hypothetical protein | SAMN04488101_11953 | Not Available | + | 5629714 - 5630580 | 33267.0 |
| hypothetical protein | SAMN04488101_11954 | Not Available | - | 5630770 - 5630958 | 6937.47 |
| hypothetical protein | SAMN04488101_11955 | Not Available | - | 5631010 - 5631186 | 6673.95 |
| hypothetical protein | SAMN04488101_11956 | Not Available | + | 5631683 - 5632384 | 26775.1 |
| hypothetical protein | SAMN04488101_11957 | Not Available | + | 5632377 - 5633276 | 34528.3 |
| hypothetical protein | SAMN04488101_11958 | Not Available | + | 5633279 - 5634361 | 40960.2 |
| putative abortive phage resistance protein abigi, antitoxin | SAMN04488101_11959 | Not Available | + | 5634378 - 5635097 | 28444.4 |
| hypothetical protein | SAMN04488101_11960 | Not Available | + | 5635125 - 5636123 | 39211.0 |
| poly a polymerase head domain-containing protein | SAMN04488101_11961 | Not Available | + | 5636449 - 5637126 | 26106.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.