Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter, acs family, hexuronate transporter | SAMN04488101_11922 | Not Available | - | 5577275 - 5578498 | 44357.9 |
| transcriptional regulator, arac family | SAMN04488101_11923 | Not Available | + | 5578665 - 5579534 | 33515.1 |
| sugar phosphate isomerase/epimerase | SAMN04488101_11924 | Not Available | + | 5579542 - 5580369 | 31833.5 |
| protein of unknown function, duf608 | SAMN04488101_11925 | Not Available | - | 5580376 - 5582574 | 81884.3 |
| sialate o-acetylesterase | SAMN04488101_11926 | Not Available | - | 5582601 - 5584505 | 71345.6 |
| d-mannonate dehydratase | SAMN04488101_11927 | Not Available | + | 5584749 - 5585942 | 44630.5 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488101_11928 | Not Available | + | 5585962 - 5586765 | 28293.2 |
| monosaccharide abc transporter substrate-binding protein, cut2 family | SAMN04488101_11929 | Not Available | - | 5587396 - 5590161 | 103766.0 |
| mfs transporter, sugar porter (sp) family | SAMN04488101_11930 | Not Available | + | 5590474 - 5591808 | 48946.4 |
| fructokinase | SAMN04488101_11931 | Not Available | + | 5591833 - 5592753 | 34634.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.