Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glucosamine-6-phosphate deaminase | SAMN04488101_11912 | Not Available | + | 5562717 - 5563472 | 28295.5 |
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN04488101_11913 | Not Available | + | 5563514 - 5564329 | 30313.0 |
| sugar phosphate isomerase/epimerase | SAMN04488101_11914 | Not Available | + | 5564333 - 5565166 | 32557.7 |
| hypothetical protein | SAMN04488101_11915 | Not Available | + | 5565177 - 5568047 | 108714.0 |
| glycosyl hydrolases family 28 | SAMN04488101_11916 | Not Available | + | 5568084 - 5569550 | 54230.4 |
| alpha-1,2-mannosidase, putative | SAMN04488101_11917 | Not Available | + | 5569540 - 5571906 | 89423.6 |
| chondroitin ac lyase | SAMN04488101_11918 | Not Available | + | 5571931 - 5574084 | 80610.4 |
| glycosyl hydrolase family 88 | SAMN04488101_11919 | Not Available | + | 5574130 - 5575308 | 44815.1 |
| transcriptional regulator, laci family | SAMN04488101_11920 | Not Available | - | 5575315 - 5576364 | 39912.4 |
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN04488101_11921 | Not Available | - | 5576488 - 5577285 | 29935.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.