Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_118101 | Not Available | - | 5539643 - 5540035 | 14089.8 |
| outer membrane protein tolc | SAMN04488101_118102 | Not Available | + | 5540225 - 5541493 | 47607.7 |
| hlyd family secretion protein | SAMN04488101_118103 | Not Available | + | 5541511 - 5542413 | 33094.2 |
| abc-type multidrug transport system, atpase component | SAMN04488101_118104 | Not Available | + | 5542410 - 5543330 | 34655.1 |
| abc-2 type transport system atp-binding protein | SAMN04488101_118105 | Not Available | + | 5543333 - 5544073 | 27498.3 |
| abc-2 type transport system permease protein | SAMN04488101_118106 | Not Available | + | 5544027 - 5545190 | 43131.8 |
| abc-2 type transport system permease protein | SAMN04488101_118107 | Not Available | + | 5545187 - 5546305 | 42148.9 |
| glyoxylase i family protein | SAMN04488101_118108 | Not Available | + | 5546319 - 5546702 | 14670.6 |
| hypothetical protein | SAMN04488101_118109 | Not Available | + | 5547089 - 5547262 | 6334.69 |
| hypothetical protein | SAMN04488101_1191 | Not Available | - | 5547317 - 5547593 | 11148.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.