Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11891 | Not Available | + | 5529669 - 5530067 | 14876.3 |
| copper chaperone copz | SAMN04488101_11892 | Not Available | + | 5530196 - 5530546 | 12856.4 |
| heavy metal efflux pump, czca family | SAMN04488101_11893 | Not Available | + | 5530606 - 5531877 | 47167.1 |
| cu(i)/ag(i) efflux system membrane protein cusa/sila | SAMN04488101_11894 | Not Available | + | 5531874 - 5533811 | 71547.5 |
| outer membrane protein tolc | SAMN04488101_11895 | Not Available | + | 5533795 - 5535048 | 47956.0 |
| multidrug efflux pump subunit acra (membrane-fusion protein) | SAMN04488101_11896 | Not Available | + | 5535026 - 5536234 | 43377.7 |
| membrane fusion protein, cu(i)/ag(i) efflux system | SAMN04488101_11897 | Not Available | + | 5536239 - 5537459 | 44579.9 |
| protein of unknown function | SAMN04488101_11898 | Not Available | + | 5537514 - 5538080 | 19902.7 |
| hypothetical protein | SAMN04488101_11899 | Not Available | + | 5538157 - 5538588 | 16317.0 |
| uncharacterized protein | SAMN04488101_118100 | Not Available | + | 5538589 - 5539602 | 36810.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.