Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488101_11881 | Not Available | + | 5516272 - 5516700 | 16012.5 |
| iron complex outermembrane recepter protein | SAMN04488101_11882 | Not Available | + | 5516821 - 5519166 | 85846.0 |
| uncharacterized iron-regulated membrane protein | SAMN04488101_11883 | Not Available | + | 5519172 - 5520308 | 42937.9 |
| lysophospholipase l1 | SAMN04488101_11884 | Not Available | + | 5520572 - 5521273 | 26838.6 |
| putative flippase gtra (transmembrane translocase of bactoprenol-linked glucose) | SAMN04488101_11885 | Not Available | - | 5521342 - 5521773 | 16163.0 |
| hypothetical protein | SAMN04488101_11886 | Not Available | - | 5521773 - 5522501 | 27503.9 |
| hypothetical protein | SAMN04488101_11887 | Not Available | - | 5522605 - 5523789 | 44829.6 |
| polygalacturonase | SAMN04488101_11888 | Not Available | + | 5523992 - 5526961 | 108275.0 |
| cu2+-exporting atpase | SAMN04488101_11889 | Not Available | + | 5527063 - 5529291 | 79772.3 |
| copper chaperone copz | SAMN04488101_11890 | Not Available | + | 5529299 - 5529562 | 9711.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.