Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspartyl protease | SAMN04488101_11861 | Not Available | + | 5500233 - 5501450 | 44799.8 |
| hypothetical protein | SAMN04488101_11862 | Not Available | + | 5501502 - 5501867 | 14137.6 |
| hypothetical protein | SAMN04488101_11863 | Not Available | + | 5501942 - 5502157 | 8542.27 |
| hypothetical protein | SAMN04488101_11864 | Not Available | + | 5502171 - 5502353 | 6433.87 |
| hsp20 family protein | SAMN04488101_11865 | Not Available | - | 5502419 - 5502817 | 15292.6 |
| nudix-type nucleoside diphosphatase, yffh/adpp family | SAMN04488101_11866 | Not Available | - | 5503060 - 5503638 | 21640.8 |
| transcriptional regulator, deor family | SAMN04488101_11867 | Not Available | + | 5503693 - 5504454 | 27976.8 |
| rna recognition motif. (a.k.a. rrm, rbd, or rnp domain) | SAMN04488101_11868 | Not Available | + | 5504492 - 5504872 | 14275.2 |
| choline-sulfatase | SAMN04488101_11869 | Not Available | - | 5504923 - 5506374 | 53871.1 |
| fecr family protein | SAMN04488101_11870 | Not Available | + | 5506732 - 5507904 | 43192.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.