Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_11821 | Not Available | + | 5444432 - 5445838 | 53098.9 |
| disulphide bond corrector protein dsbc | SAMN04488101_11822 | Not Available | + | 5445895 - 5447766 | 69261.3 |
| hypothetical protein | SAMN04488101_11823 | Not Available | - | 5447911 - 5449140 | 46228.4 |
| ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase | SAMN04488101_11824 | Not Available | - | 5449137 - 5449580 | 16275.8 |
| cxxc motif-containing protein, duf1111 family | SAMN04488101_11825 | Not Available | - | 5449583 - 5450782 | 43378.4 |
| iron dependent repressor, n-terminal dna binding domain | SAMN04488101_11826 | Not Available | + | 5450904 - 5451158 | 9635.07 |
| iron dependent repressor, metal binding and dimerisation domain | SAMN04488101_11827 | Not Available | + | 5451164 - 5451562 | 14943.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11828 | Not Available | + | 5451653 - 5452237 | 22506.5 |
| fecr family protein | SAMN04488101_11829 | Not Available | + | 5452313 - 5453503 | 44464.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11830 | Not Available | + | 5453655 - 5456975 | 122179.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.