Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11811 | Not Available | - | 5431487 - 5432134 | 23337.6 |
| hypothetical protein | SAMN04488101_11812 | Not Available | - | 5432345 - 5433562 | 46955.8 |
| hypothetical protein | SAMN04488101_11813 | Not Available | + | 5433773 - 5433943 | 6299.9 |
| hypothetical protein | SAMN04488101_11814 | Not Available | + | 5434378 - 5434779 | 15426.2 |
| hypothetical protein | SAMN04488101_11815 | Not Available | + | 5435010 - 5435819 | 30095.8 |
| hypothetical protein | SAMN04488101_11816 | Not Available | + | 5435934 - 5437190 | 48313.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11817 | Not Available | + | 5437317 - 5437892 | 22280.0 |
| fecr family protein | SAMN04488101_11818 | Not Available | + | 5437929 - 5439098 | 43548.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11819 | Not Available | + | 5439286 - 5442891 | 132429.0 |
| susd family protein | SAMN04488101_11820 | Not Available | + | 5442903 - 5444375 | 54340.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.