Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| conserved repeat domain-containing protein/gliding motility-associated c-terminal domain-containing protein | SAMN04488101_1181 | Not Available | + | 5421574 - 5423246 | 56717.3 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_1182 | Not Available | + | 5423269 - 5424237 | 35748.3 |
| wd40-like beta propeller repeat | SAMN04488101_1183 | Not Available | + | 5424255 - 5426189 | 71921.8 |
| hypothetical protein | SAMN04488101_1184 | Not Available | - | 5426388 - 5427599 | 46676.4 |
| atp-binding cassette, subfamily f, member 3 | SAMN04488101_1185 | Not Available | + | 5427759 - 5429420 | 62886.6 |
| bacteriocin-protection, ydei or ompd-associated | SAMN04488101_1186 | Not Available | + | 5429441 - 5429917 | 18071.9 |
| hypothetical protein | SAMN04488101_1187 | Not Available | - | 5430000 - 5430398 | 15671.3 |
| hypothetical protein | SAMN04488101_1188 | Not Available | - | 5430398 - 5430562 | 6345.0 |
| hypothetical protein | SAMN04488101_1189 | Not Available | - | 5430559 - 5431074 | 18521.2 |
| hypothetical protein | SAMN04488101_11810 | Not Available | - | 5431020 - 5431394 | 14142.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.