Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_11795 | Not Available | - | 5388668 - 5389252 | 21697.7 |
| regulator of nucleoside diphosphate kinase | SAMN04488101_11796 | Not Available | + | 5389873 - 5390250 | 14132.3 |
| chloramphenicol o-acetyltransferase type a | SAMN04488101_11797 | Not Available | - | 5390317 - 5390940 | 24085.4 |
| glyoxylase, beta-lactamase superfamily ii | SAMN04488101_11798 | Not Available | + | 5391071 - 5392240 | 43712.3 |
| hypothetical protein | SAMN04488101_11799 | Not Available | - | 5392242 - 5393891 | 59394.6 |
| protein of unknown function | SAMN04488101_117100 | Not Available | + | 5394132 - 5394698 | 21688.5 |
| hypothetical protein | SAMN04488101_117101 | Not Available | + | 5394726 - 5395013 | 10216.9 |
| phnb protein | SAMN04488101_117102 | Not Available | - | 5395290 - 5395730 | 16255.1 |
| Trna-ser | Not Available | Not Available | + | 5396143 - 5396230 | Not Available |
| protein n-acetyltransferase, rimj/riml family | SAMN04488101_117104 | Not Available | - | 5396508 - 5397047 | 20827.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.