Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n-acetylglucosamine-6-phosphate deacetylase | SAMN04488101_11785 | Not Available | + | 5373823 - 5375049 | 44419.6 |
| glucosamine-6-phosphate deaminase | SAMN04488101_11786 | Not Available | + | 5375056 - 5375817 | 28815.8 |
| transcriptional regulator, laci family | SAMN04488101_11787 | Not Available | + | 5375938 - 5377002 | 40734.9 |
| carbohydrate-binding family 9 | SAMN04488101_11788 | Not Available | + | 5377014 - 5377655 | 23812.3 |
| hypothetical protein | SAMN04488101_11789 | Not Available | + | 5377784 - 5379910 | 79691.1 |
| alpha-galactosidase | SAMN04488101_11790 | Not Available | + | 5379928 - 5382090 | 82562.0 |
| hypothetical protein | SAMN04488101_11791 | Not Available | + | 5382097 - 5384346 | 84795.4 |
| polygalacturonase | SAMN04488101_11792 | Not Available | + | 5384383 - 5385912 | 55445.3 |
| dna end-binding protein ku | SAMN04488101_11793 | Not Available | + | 5386024 - 5386788 | 29435.6 |
| dna ligase d | SAMN04488101_11794 | Not Available | + | 5386808 - 5388679 | 71187.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.