Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11755 | Not Available | + | 5329970 - 5333134 | 115723.0 |
| starch-binding associating with outer membrane | SAMN04488101_11756 | Not Available | + | 5333155 - 5334972 | 66293.4 |
| protein of unknown function | SAMN04488101_11757 | Not Available | + | 5334993 - 5335919 | 34069.5 |
| dienelactone hydrolase | SAMN04488101_11758 | Not Available | + | 5335939 - 5337081 | 43394.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11759 | Not Available | + | 5337142 - 5340288 | 115385.0 |
| starch-binding associating with outer membrane | SAMN04488101_11760 | Not Available | + | 5340318 - 5342153 | 67089.6 |
| protein of unknown function | SAMN04488101_11761 | Not Available | + | 5342173 - 5343105 | 34090.0 |
| hypothetical protein | SAMN04488101_11762 | Not Available | + | 5343209 - 5344330 | 41410.1 |
| hypothetical protein | SAMN04488101_11763 | Not Available | + | 5344338 - 5346719 | 88241.5 |
| mn2+ and fe2+ transporters of the nramp family | SAMN04488101_11764 | Not Available | + | 5346832 - 5348025 | 42126.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.