Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphogluconolactonase | SAMN04488101_11745 | Not Available | - | 5319426 - 5320148 | 26937.4 |
| glucose-6-phosphate 1-dehydrogenase | SAMN04488101_11746 | Not Available | - | 5320148 - 5321659 | 57832.2 |
| 6-phosphogluconate dehydrogenase (decarboxylating) | SAMN04488101_11747 | Not Available | - | 5321671 - 5323086 | 52255.6 |
| polyphosphate glucokinase | SAMN04488101_11748 | Not Available | - | 5323090 - 5323854 | 28304.1 |
| hypothetical protein | SAMN04488101_11749 | Not Available | + | 5324229 - 5324474 | 9152.03 |
| hypothetical protein | SAMN04488101_11750 | Not Available | + | 5324589 - 5325710 | 42855.7 |
| phospholipase/carboxylesterase | SAMN04488101_11751 | Not Available | - | 5325781 - 5326407 | 22786.7 |
| glyoxalase family protein | SAMN04488101_11752 | Not Available | - | 5326409 - 5327344 | 35264.9 |
| fatty acid hydroxylase superfamily protein | SAMN04488101_11753 | Not Available | + | 5327576 - 5328148 | 22620.7 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488101_11754 | Not Available | + | 5328320 - 5329825 | 54445.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.