Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11715 | Not Available | - | 5290266 - 5290763 | 19401.3 |
| proton glutamate symport protein | SAMN04488101_11716 | Not Available | + | 5290838 - 5292322 | 54085.0 |
| hypothetical protein | SAMN04488101_11717 | Not Available | + | 5292337 - 5292861 | 20208.3 |
| lsu ribosomal protein l21p | SAMN04488101_11718 | Not Available | + | 5292945 - 5293256 | 11381.0 |
| lsu ribosomal protein l27p | SAMN04488101_11719 | Not Available | + | 5293310 - 5293666 | 12415.0 |
| transcriptional regulator, contains xre-family hth domain | SAMN04488101_11720 | Not Available | - | 5293724 - 5294086 | 14102.9 |
| geranylgeranyl diphosphate synthase, type ii | SAMN04488101_11721 | Not Available | - | 5294339 - 5295307 | 36065.3 |
| ribonuclease r | SAMN04488101_11722 | Not Available | - | 5295343 - 5297478 | 80802.5 |
| mechanosensitive ion channel | SAMN04488101_11723 | Not Available | + | 5297581 - 5298471 | 33575.9 |
| peptide/nickel transport system atp-binding protein | SAMN04488101_11724 | Not Available | - | 5298468 - 5300228 | 65928.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.