Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transport system permease protein | SAMN04488101_116104 | Not Available | + | 5253955 - 5255046 | 39657.2 |
| aquaporin z | SAMN04488101_116105 | Not Available | + | 5255156 - 5255848 | 23414.9 |
| enolase | SAMN04488101_116106 | Not Available | + | 5255994 - 5257289 | 46271.9 |
| hypothetical protein | SAMN04488101_116107 | Not Available | + | 5257334 - 5257576 | 8834.38 |
| septum formation initiator | SAMN04488101_116108 | Not Available | + | 5257608 - 5257907 | 12049.5 |
| uncharacterized membrane protein yeih | SAMN04488101_116109 | Not Available | - | 5257904 - 5258515 | 22265.2 |
| hypothetical protein | SAMN04488101_116110 | Not Available | - | 5258527 - 5260614 | 77497.6 |
| l,d-transpeptidase catalytic domain | SAMN04488101_116111 | Not Available | + | 5260698 - 5261432 | 28158.0 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN04488101_116112 | Not Available | - | 5261481 - 5262224 | 26319.8 |
| agmatine deiminase | SAMN04488101_116113 | Not Available | - | 5262304 - 5263374 | 40103.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.