Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l9p | SAMN04488101_11664 | Not Available | - | 5205925 - 5206368 | 16162.7 |
| small subunit ribosomal protein s18 | SAMN04488101_11665 | Not Available | - | 5206379 - 5206642 | 10212.6 |
| ssu ribosomal protein s6p | SAMN04488101_11666 | Not Available | - | 5206642 - 5207001 | 13666.5 |
| hypothetical protein | SAMN04488101_11667 | Not Available | - | 5207143 - 5207736 | 21871.1 |
| transcriptional regulator, arac family | SAMN04488101_11668 | Not Available | + | 5207922 - 5208785 | 32910.4 |
| dna polymerase-3 subunit gamma/tau | SAMN04488101_11669 | Not Available | + | 5208864 - 5210717 | 69050.9 |
| hypothetical protein | SAMN04488101_11670 | Not Available | - | 5210720 - 5211205 | 18328.6 |
| isocitrate dehydrogenase | SAMN04488101_11671 | Not Available | - | 5211244 - 5213463 | 79860.1 |
| iron complex outermembrane recepter protein | SAMN04488101_11672 | Not Available | + | 5213641 - 5215707 | 76902.9 |
| single-strand dna-binding protein | SAMN04488101_11673 | Not Available | - | 5215723 - 5216085 | 13803.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.