Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s18 acetylase rimi | SAMN04488101_101411 | Not Available | - | 487959 - 488399 | 16832.0 |
| hypothetical protein | SAMN04488101_101412 | Not Available | + | 488646 - 488963 | 11736.2 |
| Trna-met | Not Available | Not Available | + | 489091 - 489164 | Not Available |
| uncharacterized membrane protein | SAMN04488101_101414 | Not Available | + | 489501 - 489950 | 16765.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101415 | Not Available | - | 489940 - 491178 | 47599.5 |
| uncharacterized conserved protein | SAMN04488101_101416 | Not Available | - | 491229 - 491567 | 12114.4 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04488101_101417 | Not Available | - | 491616 - 492095 | 18011.5 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_101418 | Not Available | + | 492135 - 492767 | 24622.3 |
| dihydroflavonol-4-reductase | SAMN04488101_101419 | Not Available | + | 492852 - 493868 | 37041.3 |
| carboxymethylenebutenolidase | SAMN04488101_101420 | Not Available | + | 493932 - 494819 | 32766.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.