Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_11654 | Not Available | - | 5197876 - 5199024 | 43462.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11655 | Not Available | + | 5199131 - 5199736 | 23380.9 |
| Trna-phe | Not Available | Not Available | + | 5199814 - 5199886 | Not Available |
| 4fe-4s dicluster domain-containing protein | SAMN04488101_11657 | Not Available | + | 5200090 - 5201409 | 49368.1 |
| cysteine-rich domain-containing protein | SAMN04488101_11658 | Not Available | + | 5201469 - 5202269 | 29418.4 |
| phosphoribosyl 1,2-cyclic phosphodiesterase | SAMN04488101_11659 | Not Available | + | 5202259 - 5203056 | 29422.4 |
| hypothetical protein | SAMN04488101_11660 | Not Available | - | 5203022 - 5203504 | 18686.7 |
| hypothetical protein | SAMN04488101_11661 | Not Available | + | 5203556 - 5204035 | 18410.8 |
| beta-aspartyl-peptidase (threonine type) | SAMN04488101_11662 | Not Available | - | 5204069 - 5205103 | 36453.4 |
| monofunctional biosynthetic peptidoglycan transglycosylase | SAMN04488101_11663 | Not Available | - | 5205126 - 5205848 | 27822.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.