Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c | SAMN04488101_11644 | Not Available | - | 5179806 - 5182517 | 100448.0 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488101_11645 | Not Available | - | 5182565 - 5184148 | 58332.8 |
| Trna-phe | Not Available | Not Available | + | 5184402 - 5184474 | Not Available |
| fad dependent oxidoreductase | SAMN04488101_11647 | Not Available | - | 5184746 - 5186614 | 69781.1 |
| acetyl esterase/lipase | SAMN04488101_11648 | Not Available | - | 5186658 - 5187578 | 33400.4 |
| hyaluronate lyase | SAMN04488101_11649 | Not Available | - | 5187600 - 5189957 | 87889.1 |
| glycosyl hydrolase family 88 | SAMN04488101_11650 | Not Available | - | 5189970 - 5191172 | 46435.1 |
| hypothetical protein | SAMN04488101_11651 | Not Available | - | 5191172 - 5192656 | 53331.6 |
| starch-binding associating with outer membrane | SAMN04488101_11652 | Not Available | - | 5192715 - 5194268 | 58353.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11653 | Not Available | - | 5194280 - 5197726 | 126507.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.