Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN04488101_11614 | Not Available | + | 5132234 - 5133043 | 29128.8 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN04488101_11615 | Not Available | + | 5133052 - 5133822 | 28784.0 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04488101_11616 | Not Available | + | 5133828 - 5134817 | 35758.1 |
| beta-glucosidase | SAMN04488101_11617 | Not Available | - | 5135040 - 5137451 | 89421.0 |
| uncharacterized membrane protein ykgb | SAMN04488101_11618 | Not Available | - | 5137685 - 5138242 | 20528.5 |
| arac-type dna-binding protein | SAMN04488101_11619 | Not Available | - | 5138306 - 5139151 | 32602.8 |
| glycosyl hydrolase family 88 | SAMN04488101_11620 | Not Available | - | 5139335 - 5140606 | 48648.9 |
| hypothetical protein | SAMN04488101_11621 | Not Available | - | 5140642 - 5141094 | 16664.3 |
| starch-binding associating with outer membrane | SAMN04488101_11622 | Not Available | - | 5141226 - 5142869 | 60740.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11623 | Not Available | - | 5142889 - 5146029 | 115419.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.