Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | SAMN04488101_115107 | Not Available | - | 5089751 - 5090737 | 37319.9 |
| hypothetical protein | SAMN04488101_115108 | Not Available | + | 5091080 - 5091346 | 10482.3 |
| iron-binding zinc finger cdgsh type | SAMN04488101_115109 | Not Available | + | 5091474 - 5091698 | 8047.55 |
| hypothetical protein | SAMN04488101_115110 | Not Available | + | 5091764 - 5092003 | 8597.71 |
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN04488101_115111 | Not Available | + | 5092055 - 5093932 | 69080.0 |
| hypothetical protein | SAMN04488101_115112 | Not Available | + | 5094018 - 5094515 | 18597.8 |
| endonuclease/exonuclease/phosphatase family protein | SAMN04488101_115113 | Not Available | + | 5094554 - 5095369 | 30789.8 |
| hypothetical protein | SAMN04488101_115114 | Not Available | - | 5095349 - 5095579 | 8950.05 |
| surface antigen | SAMN04488101_115115 | Not Available | - | 5095633 - 5096934 | 48572.8 |
| pas domain s-box-containing protein | SAMN04488101_115116 | Not Available | - | 5096979 - 5100551 | 135042.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.