Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase n | SAMN04488101_11597 | Not Available | + | 5080994 - 5082853 | 69813.3 |
| tonb family c-terminal domain-containing protein | SAMN04488101_11598 | Not Available | + | 5083241 - 5084197 | 36207.6 |
| 8-oxo-dgtp diphosphatase | SAMN04488101_11599 | Not Available | + | 5084210 - 5084605 | 14566.5 |
| hypothetical protein | SAMN04488101_115100 | Not Available | - | 5084607 - 5084975 | 13775.6 |
| stress responsive a/b barrel domain | SAMN04488101_115101 | Not Available | + | 5085100 - 5085396 | 11454.8 |
| fusaric acid resistance protein-like | SAMN04488101_115102 | Not Available | + | 5085470 - 5086375 | 33878.9 |
| ca2+:h+ antiporter | SAMN04488101_115103 | Not Available | + | 5086409 - 5087491 | 37938.3 |
| protein of unknown function | SAMN04488101_115104 | Not Available | + | 5087523 - 5087897 | 14300.5 |
| acetyltransferase (gnat) family protein | SAMN04488101_115105 | Not Available | + | 5087899 - 5088462 | 20795.8 |
| multidrug resistance protein | SAMN04488101_115106 | Not Available | - | 5088452 - 5089666 | 44790.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.