Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd family protein | SAMN04488101_11546 | Not Available | + | 5026478 - 5027917 | 53204.6 |
| peroxiredoxin | SAMN04488101_11547 | Not Available | + | 5027991 - 5029187 | 44135.2 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_11548 | Not Available | + | 5029205 - 5030278 | 40140.2 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_11549 | Not Available | + | 5030338 - 5031543 | 45758.5 |
| hypothetical protein | SAMN04488101_11550 | Not Available | - | 5031605 - 5033386 | 66796.1 |
| pas domain s-box-containing protein | SAMN04488101_11551 | Not Available | + | 5033522 - 5034706 | 44868.9 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_11552 | Not Available | + | 5034706 - 5035764 | 40289.0 |
| d-lactate dehydrogenase | SAMN04488101_11553 | Not Available | + | 5035847 - 5036320 | 17175.4 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN04488101_11554 | Not Available | + | 5036313 - 5037677 | 52256.2 |
| hemoglobin | SAMN04488101_11555 | Not Available | - | 5037726 - 5038112 | 14887.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.