Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_11536 | Not Available | + | 5009370 - 5010530 | 42903.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11537 | Not Available | + | 5010686 - 5014183 | 128386.0 |
| starch-binding associating with outer membrane | SAMN04488101_11538 | Not Available | + | 5014203 - 5015834 | 61172.1 |
| protein of unknown function | SAMN04488101_11539 | Not Available | + | 5015858 - 5017534 | 59259.1 |
| glycosyl hydrolase-like 10 | SAMN04488101_11540 | Not Available | + | 5017598 - 5018986 | 51632.8 |
| sialate o-acetylesterase | SAMN04488101_11541 | Not Available | + | 5019036 - 5020424 | 51949.4 |
| hypothetical protein | SAMN04488101_11542 | Not Available | + | 5020473 - 5020766 | 11596.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11543 | Not Available | + | 5020998 - 5021561 | 22195.7 |
| fecr family protein | SAMN04488101_11544 | Not Available | + | 5021631 - 5022809 | 43977.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11545 | Not Available | + | 5022932 - 5026450 | 127399.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.