Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488101_11481 | Not Available | - | 4956414 - 4958168 | 64423.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11482 | Not Available | - | 4958181 - 4961492 | 121618.0 |
| hypothetical protein | SAMN04488101_11483 | Not Available | + | 4961882 - 4963279 | 51204.8 |
| cytochrome c551/c552 | SAMN04488101_11484 | Not Available | - | 4963339 - 4965291 | 72505.8 |
| protein of unknown function | SAMN04488101_11485 | Not Available | - | 4965306 - 4966745 | 51922.7 |
| alpha-l-fucosidase | SAMN04488101_11486 | Not Available | + | 4967070 - 4967939 | 34113.7 |
| transposase | SAMN04488101_11487 | Not Available | + | 4967973 - 4968281 | 11907.7 |
| adp-ribosylglycohydrolase | SAMN04488101_1151 | Not Available | + | 4968396 - 4969931 | 57410.5 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | SAMN04488101_1152 | Not Available | + | 4970028 - 4971491 | 54217.9 |
| peroxiredoxin | SAMN04488101_1153 | Not Available | + | 4971500 - 4972609 | 41245.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.