Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, contains gh25 family domain | SAMN04488101_11471 | Not Available | + | 4938063 - 4938776 | 26173.0 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_11472 | Not Available | - | 4938874 - 4942074 | 109672.0 |
| head domain of trimeric autotransporter adhesin | SAMN04488101_11473 | Not Available | - | 4942110 - 4943576 | 52384.7 |
| hypothetical protein | SAMN04488101_11474 | Not Available | - | 4944038 - 4944229 | 7738.29 |
| hypothetical protein | SAMN04488101_11475 | Not Available | - | 4944346 - 4946700 | 87774.5 |
| hypothetical protein | SAMN04488101_11476 | Not Available | - | 4946728 - 4948956 | 85298.0 |
| starch-binding associating with outer membrane | SAMN04488101_11477 | Not Available | - | 4949000 - 4950718 | 64636.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11478 | Not Available | - | 4950720 - 4954187 | 128317.0 |
| fecr family protein | SAMN04488101_11479 | Not Available | - | 4954340 - 4955485 | 42469.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11480 | Not Available | - | 4955551 - 4956120 | 22233.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.