Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN04488101_11441 | Not Available | - | 4873368 - 4874681 | 48904.6 |
| sugar phosphate isomerase/epimerase | SAMN04488101_11442 | Not Available | - | 4874698 - 4875558 | 32310.4 |
| hypothetical protein | SAMN04488101_11443 | Not Available | - | 4875583 - 4877865 | 87591.7 |
| protein of unknown function | SAMN04488101_11444 | Not Available | - | 4877884 - 4878684 | 28156.9 |
| starch-binding associating with outer membrane | SAMN04488101_11445 | Not Available | - | 4878696 - 4880258 | 58263.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11446 | Not Available | - | 4880274 - 4883618 | 121989.0 |
| fecr family protein | SAMN04488101_11447 | Not Available | - | 4883919 - 4885073 | 43360.2 |
| rna polymerase sigma-70 factor, bacteroides expansion family 1 | SAMN04488101_11448 | Not Available | - | 4885216 - 4885794 | 22539.3 |
| chaperone of endosialidase | SAMN04488101_11449 | Not Available | - | 4885894 - 4886838 | 33928.0 |
| hypothetical protein | SAMN04488101_11450 | Not Available | - | 4886877 - 4887968 | 37921.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.