Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488101_11431 | Not Available | - | 4857120 - 4858715 | 58889.7 |
| iron complex outermembrane recepter protein | SAMN04488101_11432 | Not Available | - | 4858735 - 4861995 | 119279.0 |
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN04488101_11433 | Not Available | - | 4862063 - 4863244 | 42332.7 |
| beta-lactamase class a | SAMN04488101_11434 | Not Available | - | 4863500 - 4864354 | 31376.9 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_11435 | Not Available | - | 4864439 - 4866739 | 79811.0 |
| arginase | SAMN04488101_11436 | Not Available | - | 4866873 - 4867832 | 35747.6 |
| ornithine--oxo-acid transaminase | SAMN04488101_11437 | Not Available | - | 4867838 - 4869097 | 45916.2 |
| transcriptional regulator, asnc family | SAMN04488101_11438 | Not Available | + | 4869249 - 4869701 | 17143.0 |
| hypothetical protein | SAMN04488101_11439 | Not Available | - | 4869791 - 4870717 | 34747.1 |
| hypothetical protein | SAMN04488101_11440 | Not Available | - | 4870733 - 4873387 | 98086.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.