Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN04488101_11421 | Not Available | - | 4840439 - 4841134 | 26242.8 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488101_11422 | Not Available | + | 4841278 - 4842153 | 33745.4 |
| uncharacterized membrane protein | SAMN04488101_11423 | Not Available | + | 4842229 - 4842585 | 13118.0 |
| alpha-1,2-mannosidase, putative | SAMN04488101_11424 | Not Available | - | 4842638 - 4844842 | 81805.4 |
| mfs transporter, fhs family, l-fucose permease | SAMN04488101_11425 | Not Available | - | 4844862 - 4846295 | 52208.2 |
| alpha-1,2-mannosidase, putative | SAMN04488101_11426 | Not Available | - | 4846344 - 4848626 | 85811.4 |
| hypothetical protein | SAMN04488101_11427 | Not Available | - | 4848650 - 4850083 | 54638.6 |
| glycosyl hydrolases family 2, tim barrel domain | SAMN04488101_11428 | Not Available | - | 4850092 - 4852746 | 100716.0 |
| beta-glucosidase | SAMN04488101_11429 | Not Available | - | 4852800 - 4855523 | 100661.0 |
| alpha-l-fucosidase | SAMN04488101_11430 | Not Available | - | 4855552 - 4856997 | 54696.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.