Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488101_113133 | Not Available | + | 4790659 - 4791039 | 14641.8 |
| diaminopimelate decarboxylase | SAMN04488101_113134 | Not Available | - | 4791104 - 4792258 | 42793.8 |
| hypothetical protein | SAMN04488101_113135 | Not Available | + | 4792260 - 4792436 | 6957.99 |
| aspartate kinase | SAMN04488101_113136 | Not Available | - | 4792451 - 4793764 | 48679.6 |
| phosphoglucomutase | SAMN04488101_113137 | Not Available | + | 4793937 - 4795673 | 63754.6 |
| response regulator receiver domain-containing protein | SAMN04488101_113138 | Not Available | - | 4795682 - 4796122 | 16673.9 |
| pas domain s-box-containing protein | SAMN04488101_113139 | Not Available | - | 4796171 - 4797247 | 41621.7 |
| glutamate-5-semialdehyde dehydrogenase | SAMN04488101_113140 | Not Available | - | 4797426 - 4798673 | 45669.9 |
| glutamate 5-kinase | SAMN04488101_113141 | Not Available | - | 4798677 - 4799711 | 37094.9 |
| osmotically inducible protein osmc | SAMN04488101_113142 | Not Available | - | 4799818 - 4800231 | 14332.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.