Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd family protein | SAMN04488101_11393 | Not Available | - | 4745036 - 4746454 | 53282.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11394 | Not Available | - | 4746471 - 4749917 | 128524.0 |
| fecr family protein | SAMN04488101_11395 | Not Available | - | 4750095 - 4751195 | 41074.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11396 | Not Available | - | 4751271 - 4751855 | 22688.6 |
| uncharacterized protein yjlb | SAMN04488101_11397 | Not Available | - | 4752004 - 4752519 | 19252.5 |
| hypothetical protein | SAMN04488101_11398 | Not Available | - | 4752545 - 4752907 | 13191.6 |
| hypothetical protein | SAMN04488101_11399 | Not Available | + | 4753636 - 4754013 | 14460.4 |
| transaldolase | SAMN04488101_113100 | Not Available | - | 4754098 - 4755189 | 40969.8 |
| protein of unknown function | SAMN04488101_113101 | Not Available | + | 4755440 - 4755970 | 19806.7 |
| hypothetical protein | SAMN04488101_113102 | Not Available | - | 4756198 - 4756386 | 7135.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.