Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_11383 | Not Available | - | 4734803 - 4735972 | 43718.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11384 | Not Available | - | 4736073 - 4736654 | 22193.5 |
| hypothetical protein | SAMN04488101_11385 | Not Available | - | 4736839 - 4739154 | 89167.2 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_11386 | Not Available | + | 4739413 - 4739988 | 23126.9 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04488101_11387 | Not Available | + | 4740055 - 4740495 | 16578.2 |
| hypothetical protein | SAMN04488101_11388 | Not Available | - | 4740561 - 4740791 | 8674.5 |
| activator of hsp90 atpase homolog 1-like protein | SAMN04488101_11389 | Not Available | - | 4740894 - 4741388 | 18880.4 |
| peroxiredoxin | SAMN04488101_11390 | Not Available | - | 4741508 - 4742701 | 44900.2 |
| pkd-like family protein | SAMN04488101_11391 | Not Available | - | 4742705 - 4744219 | 54947.3 |
| protein of unknown function | SAMN04488101_11392 | Not Available | - | 4744224 - 4745018 | 29803.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.