Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glpgli family protein | SAMN04488101_11363 | Not Available | - | 4704044 - 4705723 | 62111.1 |
| heparan-sulfate lyase | SAMN04488101_11364 | Not Available | + | 4705964 - 4707946 | 76067.0 |
| heparan-sulfate lyase | SAMN04488101_11365 | Not Available | + | 4707961 - 4709940 | 75799.1 |
| peroxiredoxin | SAMN04488101_11366 | Not Available | - | 4710026 - 4711141 | 40816.6 |
| susd family protein | SAMN04488101_11367 | Not Available | - | 4711172 - 4712554 | 51642.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11368 | Not Available | - | 4712583 - 4716110 | 131486.0 |
| fecr family protein | SAMN04488101_11369 | Not Available | - | 4716232 - 4717371 | 42293.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11370 | Not Available | - | 4717435 - 4717998 | 22494.1 |
| hypothetical protein | SAMN04488101_11371 | Not Available | + | 4718148 - 4718363 | 7812.27 |
| predicted dehydrogenase | SAMN04488101_11372 | Not Available | + | 4718356 - 4719339 | 36170.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.