Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488101_11353 | Not Available | + | 4694626 - 4695390 | 27284.8 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488101_11354 | Not Available | - | 4695419 - 4696183 | 27191.6 |
| helix-turn-helix domain-containing protein | SAMN04488101_11355 | Not Available | - | 4696242 - 4696625 | 14879.7 |
| pas domain s-box-containing protein | SAMN04488101_11356 | Not Available | - | 4696641 - 4698845 | 83568.7 |
| hypothetical protein | SAMN04488101_11357 | Not Available | + | 4699003 - 4699674 | 25130.6 |
| uncharacterized protein yjbi, contains pentapeptide repeats | SAMN04488101_11358 | Not Available | - | 4699762 - 4700844 | 39946.9 |
| lysophospholipase l1 | SAMN04488101_11359 | Not Available | - | 4700992 - 4701753 | 28152.7 |
| nucleotide-binding universal stress protein, uspa family | SAMN04488101_11360 | Not Available | + | 4702169 - 4703065 | 34268.6 |
| hypothetical protein | SAMN04488101_11361 | Not Available | - | 4703099 - 4703608 | 19886.8 |
| hypothetical protein | SAMN04488101_11362 | Not Available | + | 4703757 - 4703909 | 5337.05 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.