Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_11343 | Not Available | - | 4684413 - 4685600 | 43567.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11344 | Not Available | - | 4685693 - 4686298 | 23292.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488101_11345 | Not Available | - | 4686376 - 4687146 | 27495.0 |
| uncharacterized conserved protein yjbj, upf0337 family | SAMN04488101_11346 | Not Available | + | 4687236 - 4687460 | 8484.15 |
| erythromycin esterase | SAMN04488101_11347 | Not Available | + | 4687582 - 4688784 | 46021.7 |
| arac-type dna-binding protein | SAMN04488101_11348 | Not Available | - | 4688807 - 4689709 | 35176.4 |
| alpha-l-fucosidase | SAMN04488101_11349 | Not Available | + | 4689895 - 4691214 | 49831.0 |
| l-fuconate dehydratase | SAMN04488101_11350 | Not Available | + | 4691311 - 4692540 | 45637.8 |
| solute:na+ symporter, sss family | SAMN04488101_11351 | Not Available | + | 4692550 - 4694193 | 59838.5 |
| l-rhamnose mutarotase | SAMN04488101_11352 | Not Available | + | 4694210 - 4694614 | 15621.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.