Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11333 | Not Available | + | 4674882 - 4675256 | 13318.0 |
| hypothetical protein | SAMN04488101_11334 | Not Available | - | 4675330 - 4675503 | 6503.61 |
| protein of unknown function | SAMN04488101_11335 | Not Available | - | 4675527 - 4675856 | 11836.3 |
| hypothetical protein | SAMN04488101_11336 | Not Available | + | 4676010 - 4676276 | 10293.6 |
| hypothetical protein | SAMN04488101_11337 | Not Available | - | 4676277 - 4676435 | 6073.35 |
| hypothetical protein | SAMN04488101_11338 | Not Available | + | 4676653 - 4677279 | 23634.2 |
| protein of unknown function | SAMN04488101_11339 | Not Available | + | 4677284 - 4678117 | 31698.1 |
| peroxiredoxin | SAMN04488101_11340 | Not Available | - | 4678168 - 4679343 | 43892.8 |
| starch-binding associating with outer membrane | SAMN04488101_11341 | Not Available | - | 4679346 - 4680794 | 53516.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11342 | Not Available | - | 4680825 - 4684190 | 123393.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.