Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydro-l-gulonate 2-dehydrogenase | SAMN04488101_11323 | Not Available | + | 4669068 - 4670057 | 36242.7 |
| hypothetical protein | SAMN04488101_11324 | Not Available | - | 4670050 - 4670556 | 19268.0 |
| hypothetical protein | SAMN04488101_11325 | Not Available | - | 4670560 - 4670754 | 7521.28 |
| ferredoxin-nadp reductase | SAMN04488101_11326 | Not Available | + | 4670928 - 4671641 | 27274.0 |
| hypothetical protein | SAMN04488101_11327 | Not Available | - | 4671674 - 4671844 | 5810.22 |
| hypothetical protein | SAMN04488101_11328 | Not Available | + | 4672027 - 4672281 | 9698.08 |
| exodeoxyribonuclease-3 | SAMN04488101_11329 | Not Available | - | 4672330 - 4673112 | 29927.8 |
| hypothetical protein | SAMN04488101_11330 | Not Available | + | 4673245 - 4673580 | 12579.4 |
| ribonuclease bn, trna processing enzyme | SAMN04488101_11331 | Not Available | - | 4673577 - 4674314 | 27148.0 |
| hypothetical protein | SAMN04488101_11332 | Not Available | - | 4674356 - 4674763 | 15083.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.