Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_11313 | Not Available | - | 4661030 - 4661413 | 14423.6 |
| hypothetical protein | SAMN04488101_11314 | Not Available | - | 4661391 - 4662188 | 29777.6 |
| hypothetical protein | SAMN04488101_11315 | Not Available | - | 4662251 - 4662454 | 7427.15 |
| fatty acid hydroxylase superfamily protein | SAMN04488101_11316 | Not Available | - | 4662470 - 4663102 | 24885.1 |
| catechol-2,3-dioxygenase | SAMN04488101_11317 | Not Available | - | 4663200 - 4663868 | 25706.4 |
| prc-barrel domain-containing protein | SAMN04488101_11318 | Not Available | + | 4663976 - 4664734 | 28634.8 |
| alpha-l-fucosidase | SAMN04488101_11319 | Not Available | + | 4664900 - 4666456 | 58906.2 |
| cytosine/adenosine deaminase | SAMN04488101_11320 | Not Available | - | 4666541 - 4667893 | 49954.2 |
| mj0570-related uncharacterized domain-containing protein | SAMN04488101_11321 | Not Available | - | 4668038 - 4668727 | 26047.3 |
| hypothetical protein | SAMN04488101_11322 | Not Available | + | 4668833 - 4669012 | 6539.42 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.