Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN04488101_1133 | Not Available | - | 4650998 - 4652860 | 71870.8 |
| atp-dependent rna helicase rhle | SAMN04488101_1134 | Not Available | + | 4652996 - 4654126 | 41478.9 |
| hypothetical protein | SAMN04488101_1135 | Not Available | - | 4654216 - 4654518 | 11387.7 |
| arac-type dna-binding protein | SAMN04488101_1136 | Not Available | - | 4654649 - 4655485 | 31931.9 |
| methionyl aminopeptidase | SAMN04488101_1137 | Not Available | + | 4655593 - 4656354 | 27736.1 |
| hypothetical protein | SAMN04488101_1138 | Not Available | + | 4656418 - 4657239 | 30278.3 |
| alkaline and neutral invertase | SAMN04488101_1139 | Not Available | - | 4657263 - 4658441 | 44554.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_11310 | Not Available | - | 4658452 - 4659594 | 42329.6 |
| glcnac-pi de-n-acetylase | SAMN04488101_11311 | Not Available | - | 4659572 - 4660234 | 25247.3 |
| translation elongation factor p (ef-p) | SAMN04488101_11312 | Not Available | + | 4660402 - 4660962 | 20654.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.