Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cysteine synthase b | SAMN04488101_112131 | Not Available | + | 4641365 - 4642237 | 31922.2 |
| septal ring factor envc, activator of murein hydrolases amia and amib | SAMN04488101_112132 | Not Available | + | 4642265 - 4643518 | 47844.6 |
| trna pseudouridine65 synthase | SAMN04488101_112133 | Not Available | + | 4643553 - 4644230 | 26079.7 |
| chromosomal replication initiator protein dnaa | SAMN04488101_112134 | Not Available | + | 4644428 - 4645861 | 54141.5 |
| Trna-glu | Not Available | Not Available | + | 4645996 - 4646070 | Not Available |
| tetratricopeptide repeat-containing protein | SAMN04488101_112136 | Not Available | + | 4646218 - 4647369 | 43564.7 |
| hypothetical protein | SAMN04488101_112137 | Not Available | - | 4647431 - 4647949 | 19688.2 |
| dinb superfamily protein | SAMN04488101_112138 | Not Available | + | 4648410 - 4648880 | 17892.5 |
| hypothetical protein | SAMN04488101_1131 | Not Available | - | 4649462 - 4649863 | 15454.2 |
| two component transcriptional regulator, luxr family | SAMN04488101_1132 | Not Available | - | 4650397 - 4651011 | 22840.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.